This week in MathOnco 168
Artistoo, personalized immunotherapy, single-cell, collective migration, and (finally) MathOnco conferences
“This week in Mathematical Oncology” — Newsletter
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mathematical-oncology.org
July 1, 2021
From the editor:
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jeffrey.west@moffitt.org
By popular demand, today we will begin posting conferences or workshops relevant to math oncology in this newsletter. To help us keep current, we urge you to contact us (or tweet us!) to add links. We also want to direct you to
mathematical-oncology.org
as a community resource to sign up for the newsletter, view the complete list of resources, and for information about the Society for Math Biology subgroup.
- Jeffrey West
Artistoo, a library to build, share, and explore simulations of cells and tissues in the web browser
Inge Wortel, Johannes TextorIn silico investigations of intratumoral heterogeneous interstitial fluid pressure
Jahn Otto Waldeland, Jon-Vidar Gaustad, Einar K. Rofstad, Steinar EvjeA whole-body circulatory neutrophil model with application to predicting clinical neutropenia from in vitro studies
Wenbo Chen, Britton Boras, Tae Sung, Wenyue Hu, Mary E. Spilker, David Z. D’ArgenioThe role of single-cell sequencing in studying tumour evolution
Maximilian Mossner, Ann-Marie C Baker, Trevor A GrahamPersonalized Immunotherapy Treatment Strategies for a Dynamical System of Chronic Myelogenous Leukemia
Paul A. Valle, Luis N. Coria, Corina PlataBeyond the single average tumor: Understanding IO combinations using a clinical QSP model that incorporates heterogeneity in patient response
Rukmini Kumar, Kannan Thiagarajan, Lakshmanan Jagannathan, Liming Liu, Kapil Mayawala, Dinesh de Alwis, Brian ToppCharacterizing Errors in Pharmacokinetic Parameters from Analyzing Quantitative Abbreviated DCE-MRI Data in Breast Cancer
Kalina P. Slavkova, Julie C. DiCarlo, Anum S. Kazerouni, John Virostko, Anna G. Sorace, Debra Patt, Boone Goodgame, Thomas E. YankeelovCollective Cell Migration in a Fibrous Environment: A Hybrid Multiscale Modelling Approach
Szabolcs Suveges, Ibrahim Chamseddine, Katarzyna A. Rejniak, Raluca Eftimie, Dumitru Trucu
Coordination games in cancer
Péter Bayer, Robert A. Gatenby, Patricia H. McDonald, Derek R. Duckett, Kateřina Staňková, Joel S. BrownPrecancer: Mutant clones in normal epithelium outcompete and eliminate esophageal micro-tumors
B. Colom, A. Herms, M.W.J. Hall, S.C. Dentro, C. King, R.K. Sood, M.P. Alcolea, G. Piedrafita, D. Fernandez-Antoran, S.H. Ong, J.C. Fowler, K.T. Mahbubani, K. Saeb-Parsy, M. Gerstung, B.A. Hall, P.H. JonesGraph-based machine learning reveals rules of spatiotemporal cell interactions in tissues
Takaki Yamamoto, Katie Cockburn, Valentina Greco, Kyogo Kawaguchi
The newsletter now has a dedicated homepage (thisweekmathonco.substack.com), which allows us to post cover artwork for each issue. We encourage submissions that coincide with the release of a recent paper from your group. Today’s submission was contributed by Inge Wortel & Johannes Textor and was produced using their recently published Artistoo modelling framework:
Caption: Artistoo allows users to build simulations of cells and tissues that can be shared in the web browser. This example shows a cellular Potts model of T cells (red) infiltrating a growing tumor (light gray) in an epithelial layer (black). See here for the example code underlying this simulation, and here for details on the migration model. For illustration purposes, the tumor grows at an accelerated rate; real tumor growth would be much slower than T-cell motion. To get started with Artistoo modeling yourself, you can find docs and tutorials on the Artistoo webpage.
Created by Inge Wortel & Johannes Textor
Visit the mathematical oncology page to view jobs, meetings, and special issues. We will post new additions here, but the full list can found at mathematical-oncology.org.
1. Jobs
NEW: CRUK City of London Centre 2021 Cancer Evolution Symposium - 13 Sept 2021
NEW: Meetings in Microbial Ecology & Evolution - 16-20 May & 30 May - 3 Jun 2022
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